You really want Crunch for the Charged Moves. My experience with Stone Edge against Mewtwo is one of disappointment. The team's lookin' good though.
Without Shadow Claw, I would only really use Gengar if Mewtwo knows Psycho Cut. Look into doing some Tyranitar raids this week - Tyranitar really is the best counter for Mewtwo, even at level 20 fresh-caught it is a good counter.